Publications
Manuscripts | Press Coverage | Posters | Talk
Manuscripts
- Li R, Tsaih SW, Shockley K, Stylianou IM, Wergedal J, et al. (2006) Structural Model Analysis of Multiple Quantitative Traits. PLoS Genet 2(7): e114
- Shockley and Churchill (2006), Gene Expression Analysis of Mouse Chromosome Substitution Strains, accepted by Mammalian Genome (Feb, 2006) (dataset and scripts used in this study can be downloaded here.)
- Cui, Hwang, Qiu, Blades and Churchill (2005), Improved Statistical Tests for Differential Gene Expression by Shrinking Variance Components, Biostatistics 6(1):59-75.
- Cui and Churchill(2003), How many mice and how many arrays? Replication in mouse cDNA microarray experiments, in "Methods of Microarray
Data Analysis III", Edited by Kimberly F. Johnson and Simon M. Lin. Kluwer
Academic Publishers, Norwell, MA. pp 139-154. - Cui and Churchill(2002), Statistical Tests for Differential Expression in cDNA Microarray Experiments, Genome Biology, 4:201.
- Cui, Kerr and Churchill(2002), Transformation for cDNA Microarray Data, Statistical Applications in Genetics and Molecular Biology. vol
2, issue 1 article 4. Supplemental figures for the paper. - Wu, Kerr, Cui and Churchill(2002), MAANOVA: A Software Package for the Analysis of Spotted cDNA Microarray Experiments, Chapter of The analysis of gene expression data: methods and software, Springer (two color figures are here: Color figure 4 and Color figure 6).
- Kerr, Leiter, Picard and Churchill(2001), Analysis of a designed microarray experiment, Proceedings of the IEEE-Eurasip Nonlinear Signal and Image Processing Workshop, June 3-6 2001.
- Kerr and Churchill(2001), Experimental design for gene expression microarrays, Biostatistics, 2:183-201.
- Sen and Churchill(2001), A Statistical framework for quantitative trait mapping, Genetics, 159:371-387.
- Kerr, Afshari, Bennett, Bushel, Martinez, Walker and Churchill(2001), Statistical analysis of a gene expression microarray experiment with replication, Statistica Sinica, to appear.
- Kerr and Churchill(2001), Statistical design and the analysis of gene expression microarrays, Genetical Research, 77:123-128.
- Kerr and Churchill(2000), Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experiments, Proceedings of the National Academy of Sciences, 98:8961-8965.
- Kerr, Martin and Churchill(2000), Analysis of variance for gene expression microarray data, Journal of Computational Biology, 7:819-837.
Press Coverage
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The Complex Trait Consortium (2004), The Collaborative Cross, a community resource for the genetic analysis of complex traits, Nature Genetics 36, 1133 - 1137.
- Researchers didn't scurry around fields looking for mice, BioMed Central, July 7, 2004
- Complex Rhythms in "Editors' Choice" edited by Gilbert Chin, Science on June 29, 2001.
- Genomics of salt-induced hypertension by Barbra Rodriguez, Genome News Network on February 26, 2001.
Posters
- Churchill(2002), Talks presented at Woods Hole MBL, Oct 2002. (1) Data Transformation, (2) Experimental design.
- Xiangqin Cui(2002), The Application of Ratio by Intensity Plot in Microarray Normalization.
- Churchill(2001), Statistical design and the analysis of gene expression microarray data.
- Churchill(2001), Mapping and characterizing QTL in inbred line crosses. ( PDF / PS.GZ )
- Kerr(2001), Statistical inference for gene expression microarray data analysis. ( PDF / PPT )
- Sapir and Churchill(2000), Estimating the posterior probability of differential gene expression from microarray data.
Talk
- Churchill(2000), Making the most of microarray experiments, talk on June 24, 2000, at the workshop on Mathematics and Computational Biology of Genome Analysis at MSRI.
- Qian Li(2006), Brief tour of Rqtl, talk on Sep 18, 2006, at "Short Course 0n Complex Trait Analysis" at Jackson Laboratory.
