J/qtl Screenshots - The Jackson Laboratory

Here are some screen shot of J/qtl software. Click the thumbnail to view the full size picture in a new window.

	Main Window Users will see this window right after starting J/qtl.
	Genotype Plot Different color represents different genotypes. Clicking on a box you will see the detailed data on a pop up screen.
	Genetic Map Plot Vertical lines represent the chromosomes. Horizontal bars represent the markers. You can compare the current genetic map to genetic maps estimated by several R/qtl algorithms.
	One-QTL scan result plot This is the LOD score curve for a one-QTL genome scan.
	Two-QTL scan result plot This is the result for a Two-QTL genome scan. Hovering mouse over a point you will see an abstract of the results.
	Two-QTL scan result summary Given some thresholds, the result will be summarized in a table. Clicking a link of the QTL pairs (first column in the table) will pop up a window showing the effect plot.
	Fit QTL The graphical formula editor makes it easy to create and evaluate a fit formula.