Software
- QTL mapping
- Gene expression
- Genome Browser
R/maanova
Current Version 1.8.1 (Jan 20, 2008)
[ Download | Readme | Status | Screen shots | Software Manual | Sample Data ]
R/maanova is an extensible, interactive environment for Microarray analysis. It is implemented as an add-on package for the freely available and widely used statistical language/software R (see the R project homepage).
maanova stands for MicroArray ANalysis Of VAriance. It provides a complete work flow for microarray data analysis including:
- Data quality checks and visualization
- Data transformation
- ANOVA model fitting for both fixed and mixed effects models
- Statistical tests including permutation
- Confidence interval with bootstrapping
- Cluster analysis
R/maanova can be applied to any microarray data but it is specially tailored for multiple factor experimental designs. Mixed effects models are implemented to estimate variance components and perform F and t tests for differential expressions.
R/maanova is distributed as source code for Unix/Linux/Mac or compiled code for Windows. The software are well tested in Linux, Mac and Windows(9x/NT4/2000/XP). You may encounter problems in other operating systems or other R versions. Please send email to maanova@jax.org for further information about the programs.
For problems/questions/suggestions, please send email to maanova@jax.org.
